Tue Mar 27 17:08:13 1990
Program RESTSITE v1.1
A program for analyzing restriction site or fragment data.
Copyright (c) 1990 by Joyce C. Miller.  All Rights Reserved.

This file, SAMPLE.OUT, contains output from analysis of file SAMPLE.LST:

Analyzing site data via:
   Jukes-Cantor method (Equations 5.38, 5.41, 5.3, 5.44 of Nei (1987)).
   Nei & Li (1979) method (Equations 5.38, 5.42, 5.45 of Nei (1987)).
   Standard errors derived via jackknifing.


Pan.paniscus vs. Pan.troglodytes

TOTAL FOR R = 4.0:          OTU X                    OTU Y
     Mx, My, Mxy =      26      26      25      284     283     273
               S =  0.961538  +_   undef.     0.962963  +_   undef.
               p =  0.009757  +_   undef.     0.009391  +_   undef.
  Jukes-Cantor d =  0.009821  +_   undef.     0.009450  +_   undef.
        Nei-Li d =  0.009805  +_   undef.     0.009435  +_   undef.
                          X-Y (Raw)             X-Y (Corrected)
     Mx, My, Mxy =     260     189     180
               S =  0.801782  +_   undef.     0.833236  +_   undef.
               p =  0.053732  +_   undef.     0.044585  +_   undef.
  Jukes-Cantor d =  0.055754  +_   undef.     0.046119  +_   undef.
        Nei-Li d =  0.055230  +_   undef.     0.045610  +_   undef.

TOTAL FOR R = 5.3:          OTU X                    OTU Y
     Mx, My, Mxy =      24      24      24      491     490     444
               S =  1.000000  +_  0.000000    0.905199  +_  0.025232
               p =  0.000000  +_  0.000000    0.018502  +_  0.005081
  Jukes-Cantor d =  0.000000  +_  0.000000    0.018734  +_  0.005195
        Nei-Li d =  0.000000  +_  0.000000    0.018675  +_  0.005166
                          X-Y (Raw)             X-Y (Corrected)
     Mx, My, Mxy =     240     327     231
               S =  0.814815  +_  0.065109    0.856420  +_  0.055957
               p =  0.037671  +_  0.014078    0.028643  +_  0.011679
  Jukes-Cantor d =  0.038650  +_  0.014719    0.029283  +_  0.012126
        Nei-Li d =  0.038399  +_  0.014553    0.029062  +_  0.011974

TOTAL FOR R = 6.0:          OTU X                    OTU Y
     Mx, My, Mxy =     110     110     103     1629    1629    1513
               S =  0.936364  +_  0.025018    0.928791  +_  0.019442
               p =  0.010899  +_  0.004395    0.012236  +_  0.003445
  Jukes-Cantor d =  0.010979  +_  0.004457    0.012337  +_  0.003502
        Nei-Li d =  0.010959  +_  0.004441    0.012312  +_  0.003487
                          X-Y (Raw)             X-Y (Corrected)
     Mx, My, Mxy =    1100    1086     901
               S =  0.824337  +_  0.048556    0.883941  +_  0.042149
               p =  0.031683  +_  0.009441    0.020351  +_  0.007732
  Jukes-Cantor d =  0.032372  +_  0.009840    0.020714  +_  0.007973
        Nei-Li d =  0.032196  +_  0.009737    0.020561  +_  0.007881

ALL ENZYME CLASSES:          OTU X                    OTU Y
               S =  0.948430  +_  0.019077    0.927093  +_  0.015373
               p =  0.009202  +_  0.003336    0.013210  +_  0.002843
  Jukes-Cantor d =  0.009268  +_  0.003380    0.013333  +_  0.002892
        Nei-Li d =  0.009252  +_  0.003369    0.013302  +_  0.002880
                          X-Y (Raw)             X-Y (Corrected)
               S =  0.820473  +_  0.035824    0.874984  +_  0.031506
               p =  0.034901  +_  0.007441     undef.   +_   undef.
  Jukes-Cantor d =  0.035772  +_  0.007772    0.024471  +_  0.006495
        Nei-Li d =  0.035548  +_  0.007687    0.024272  +_  0.006416