Genes Categorized by Multigene Family

See Multigene Family Analysis for details of analysis methods.

ID Multigene Family # Genes in Family Average Percent Identity Completeness
882 ABC Transporter ATP-binding protein 85 30% 64%
3169 cell surface protein 62 37% 4%
2221 sensory transduction histidine kinase 49 37% 8%
1126 methyltransferase 46 33% 13%
1467 predicted protein 29 99% 92%
1643 oligopeptide ABC transporter(permease) 26 35% 52%
1777 conserved hypothetical protein 25 34% 94%
1769 transposase (A. fulgidus IS0963 family) 21 99% 100%
3065 iron ABC transporter, solute-binding protein 21 27% 86%
58 transposase 20 93% 98%
1644 oligopeptide ABC transporter, solute-binding protein 19 28% 88%
1706 iron-sulfur flavoprotein 19 37% 24%
28 transposase (B. stearothermophilus ORF A family) 18 59% 57%
55 transposase; IstB-like ATP binding protein 18 96% 100%
35 conserved hypothetical protein 16 97% 99%
3767 conserved hypothetical protein 15 95% 97%
1828 conserved hypothetical protein 15 29% 91%
1724 MFS transporter family 14 25% 32%
2955 polysaccharide biosynthesis protein,LPS biosynthesis protein/sugar transferase 14 26% 42%
1533 predicted protein 14 56% 97%
2997 ABC transporter, permease protein 13 31% 42%
3064 Fe (III) ABC transporter, permease protein 13 38% 90%
3768 transposase 13 69% 67%
3918 nitrogenase, subunit 13 29% 47%
1675 methylamine corrinoid protein 12 45% 85%
2757 metallo cofactor biosynthesis protein family 12 26% 39%
80 O-linked GlcNAc transferase 11 28% 39%
1463 response regulator 11 35% 45%
3030 sulfate/molybdenum/phosphate ABC transporter, permease protein 11 35% 40%
1181 transcription repressor; MarR family protein 10 41% 44%
1768 protoporphyrin IX magnesium chelatase 10 37% 93%
1680 methylcobamide:CoM methyltransferase & isozyme 10 35% 93%
1711 predicted protein 10 99% 82%
1040 predicted protein 9 69% 100%
1904 ferredoxin; "formylmethanofuran dehydrogenase, subunit G" 9 44% 50%
3170 predicted protein 9 36% 92%
2998 dihydropyrimidinase; hydantoinase/oxoprolinase 9 51% 81%
2067 cell surface protein 8 52% 95%
1729 conserved hypothetical protein 8 48% 93%
1900 conserved hypothetical protein 8 48% 100%
3027 cobalt ABC transporter, permease protein 8 28% 43%
3820 conserved hypothetical protein 8 33% 75%
1721 cation-transporting P-type ATPase 8 32% 57%
2217 bacterial transcription regulatory protein, tetR family 8 39% 50%
2811 hypothetical protein 8 33% 50%
846 cell surface protein 8 29% 46%
3920 nitrogen regulatory protein P-II family 8 40% 100%
2276 carboxymuconolactone decarboxylase 8 41% 54%
2114 cation efflux system protein (cadmium/zinc/cobalt) 8 28% 96%
1615 aspartate aminotransferase; histidinol-phosphate aminotransferase 7 31% 81%
3876 GDP-mannose 4,6-dehydratase; UDP-glucose 4-epimerase; dTDP-glucose 4,6-dehydratase 7 33% 100%
2116 conserved hypothetical protein 7 63% 100%
1602 nucleotidyltransferase 7 49% 100%
3720 NifH; CODH nickel-insertion accessory protein 7 41% 86%
118 predicted protein 7 27% 52%
1928 cell surface protein 7 31% 90%
1760 integral membrane protein; DNA damage-inducible protein 7 38% 100%
78 molybdenum ABC transporter 7 35% 38%
2070 predicted protein 7 47% 100%
1717 universal stress protein 7 48% 100%
2996 ABC transporter, ATP-binding protein; RNase L inhibitor; methylcoenzyme M reductase system, component A2" 7 % 57%
1611 cyclohexanol dehydrogenase; estradiol 17 beta-dehydrogenase 7 32% 100%
2019 predicted protein 7 36% 76%
1856 flagella protein I (type II secretion system protein) 6 40% 53%
149 dehydrogenase-hydrogenase, subunit; Na+/H+ antiporter 6 26% 67%
3922 2-isopropylmalate synthase 6 35% 53%
1036 predicted protein 6 34% 100%
1959 cobalamin biosynthesis protein 6 46% 100%
3730 acetyltransferase 6 42% 40%
1574 chaperonin, subunit; groEL protein 6 38% 100%
1863 flagellar protein H 6 35% 60%
1781 conserved hypothetical protein 6 46% 100%
1962 transposase 6 61% 100%
2859 bacteriochlorophyll synthase; geranylgeranyl reductase 6 29% 93%
3877 glycosyltransferase group2 family protein 6 25% 47%
3770 capsular polysaccharide biosynthesis protein 14L 6 24% 93%
3132 efflux system accessory protein; bacterial regulatory protein, arsR family 5 32% 60%
845 conserved hypothetical protein 5 30% 70%
3141 conserved hypothetical protein 5 22% 50%
1650 formylmethanofuran dehydrogenase, subunit B 5 48% 100%
75 ethanolamine permease 5 24% 60%
3026 phosphate regulatory protein homolog 5 44% 100%
2188 permease 5 23% 60%
2953 integral membrane protein 5 34% 100%
885 predicted protein 5 58% 100%
2810 protein regulator (xylR homolog); transcriptional regulator 5 51% 100%
3771 capsular polysaccharide biosynthesis protein; coenzyme F390 synthetase; phenylacetyl-CoA-ligase 5 32% 100%
1770 conserved hypothetical protein 5 64% 100%
2063 flavoredoxin FLR; FMN-binding protein 5 39% 55%
3168 outer membrane protein 5 36% 60%
2220 predicted protein 5 59% 45%
3880 nitrogenase 5 55% 100%
1924 transposase 5 94% 100%
3147 glutathione/thioredoxin reductase (NADPH); dihydrolipoamide dehydrogenase; Glutamate synthase (NADPH) 5 35% 50%
1708 iron-sulfur cluster binding protein 5 30% 60%
2073 heterodisulfide reductase subunit 5 30% 50%
30 cell surface protein 4 38% 33%
889 tryptophan synthase, subunit beta 4 28% 50%
1528 conserved hypothetical protein 4 86% 100%
2765 indolepyruvate decarboxylase; acetolactate synthase 4 29% 100%
1709 conserved hypothetical protein 4 38% 83%
1599 protein export membrane protein 4 56% 100%
2903 predicted protein 4 75% 100%
2860 aldehyde dehydrogenase 4 40% 100%
1624 predicted protein 4 37% 100%
892 conserved hypothetical protein 4 47% 100%
3023 predicted protein 4 36% 100%
2242 menaquinone biosynthesis methyltransferase 4 32% 50%
3875 transmembrane oligosaccharyl transferase 4 54% 100%
3108 F420H2 dehydrogenase, subunit FpoF 4 33% 100%
3097 fructose-bisphosphate aldolase 4 58% 50%
2911 predicted protein 4 53% 100%
2216 transposase 4 99% 100%
2155 phycocyanin alpha phycocyanobilin lyase related protein 4 28% 83%
3165 reverse transcriptase 4 59% 100%
2949 conserved hypothetical protein 4 75% 67%
1707 NADPH nitroreductase 4 35% 100%
2115 conserved hypothetical protein 4 43% 83%
991 conserved hypothetical protein 4 23% 50%
940 phage integrase(transposase A) 4 42% 100%
1712 conserved hypothetical protein 4 51% 100%
1193 predicted protein 4 50% 83%
2021 conserved hypothetical protein 4 46% 67%
2113 H(+)-transporting ATP synthase subunit 4 26% 67%
1870 nifS protein; cysteine desulphurase 4 39% 100%
1649 formylmethanofuran dehydrogenase, subunit D 4 41% 100%
1603 conserved hypothetical protein 4 48% 100%
1601 conserved hypothetical protein 4 36% 100%
1127 metalo-beta-lactamase 4 42% 83%
116 conserved hypothetical protein 4 64% 100%
3727 long-chain fatty-acid-CoA ligase 4 34% 100%
1735 nucleotidyltransferase 4 39% 100%
993 predicted protein 4 41% 100%
941 conserved hypothetical protein 4 38% 58%
2956 dolichol-P-glucose synthetase 4 23% 50%
2018 predicted protein 4 46% 83%
942 predicted protein 4 41% 100%
37 conserved hypothetical protein 3 23% 100%
888 predicted protein 3 51% 100%
1220 conserved hypothetical protein 3 27% 100%
74 mercury ion binding protein 3 48% 67%
1480 pyruvate ferredoxin/flavodoxin oxidoreductase subunit 3 34% 67%
2279 predicted protein 3 49% 67%
1183 hypothetical protein 3 46% 100%
1906 phosphomannomutase 3 54% 100%
1741 conserved hypothetical protein 3 44% 100%
3926 predicted protein 3 98% 100%
3167 nucleotide binding protein 3 28% 67%
3105 crcB family protein 3 39% 100%
3062 predicted protein 3 49% 100%
2065 predicted protein 3 59% 67%
1938 predicted protein 3 49% 100%
994 conserved hypothetical protein 3 51% 67%
3063 conserved hypothetical protein 3 48% 100%
1647 formylmethanofuran dehydrogenase, subunit A 3 59% 100%
1604 GPR1/FUN34/yaaH family protein 3 53% 100%
1041 hypothetical protein 3 43% 100%
2315 flagellin 3 42% 100%
2297 methyltransferase 3 28% 100%
1765 conserved hypothetical protein 3 71% 100%
143 sodium(potassium) transport protein 3 41% 100%
3763 predicted protein 3 95% 100%
3724 pyruvate flavodoxin/ferredoxin oxidoreductase 3 34% 100%
2803 bacterioferritin comigratory protein bcp; peroxidase 3 30% 100%
2767 pyruvate, phosphate dikinase 3 44% 100%
2157 predicted protein 3 38% 67%
890 tRNA ligase 3 24% 100%
3029 phosphate ABC transporter, solute-binding protein 3 30% 100%
3171 predicted protein 3 55% 100%
2326 predicted protein 3 70% 100%
1149 conserved hypothetical protein 3 34% 67%
1122 conserved hypothetical protein 3 28% 100%
995 hypothetical protein 3 27% 67%
844 predicted protein 3 55% 100%
833 tolB protein homolog 3 49% 67%
1 conserved hypothetical protein 3 56% 67%
3100 ubiA prenyltransferase family protein 3 23% 100%
3066 cell division protein FtsZ 3 34% 67%
2912 rhodanese family protein 3 43% 100%
2854 conserved hypothetical protein 3 45% 100%
2296 26S protease regulatory subunit 4 3 40% 67%
1767 conserved hypothetical protein 3 86% 100%
1212 UTP--glucose-1-phosphate uridylyltransferase 3 46% 100%
3961 haloacid dehalogenase-like hydrolase family protein 3 41% 67%
1555 phosphoribosylformylglycinamidine cyclo-ligase 3 26% 67%
3818 nitrogenase related proteins 3 32% 67%
3868 glutamine aminotransferase (class I) 3 46% 100%
3032 translation initiation factor 1A 3 76% 100%
2319 peptidylprolyl isomerase 3 54% 100%
2295 mannose-1-phosphate guanylyltransferase; glucose-1-phosphate thymidylyltransferase 3 33% 100%
2278 conserved hypothetical protein 3 35% 100%
1835 histidine biosynthesis protein F; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 3 28% 67%
1798 3-isopropylmalate dehydratase 3 61% 100%
1645 formylmethanofuran dehydrogenase, subunit E 3 32% 100%
1044 cell division control protein 48 3 50% 100%
943 hypothetical protein 3 31% 100%
887 predicted protein 3 91% 100%
152 conserved hypothetical protein 3 62% 100%
51 sodium:proline proline permease 3 25% 100%
1619 acetylornithine aminotransferase; glutamate-1-semialdehyde2,1-aminomutase 3 34% 100%
3729 NAD+ synthetase 3 47% 100%
3728 conserved hypothetical protein 3 42% 100%
2144 predicted protein 3 54% 100%
2106 conserved hypothetical protein 3 79% 100%
2077 dimethylamine methyltransferase 3 90% 100%
2071 conserved hypothetical protein 3 59% 100%
2069 predicted protein 3 47% 100%
31 conserved hypothetical protein 3 61% 100%
3133 acetyltransferase (GNAT) family protein 3 31% 67%
3110 chloride peroxidase; hydrolase; lipolytic enzyme 3 23% 67%
3101 ammonium transporter 3 36% 100%
2999 hypothetical protein 3 59% 100%
2857 sulfite reductase 3 65% 100%
2808 rubrerythrin; nigerythrin 3 38% 67%
2294 glutathione-regulated potassium-efflux system protein 3 37% 100%
2246 reverse transcriptase 3 97% 100%
1825 conserved hypothetical protein 3 23% 67%
1523 S-methyltransferase 3 60% 100%
1511 predicted protein 3 45% 100%
839 conserved hypothetical protein 3 43% 100%
36 methyltransferase 3 31% 67%
2223 acetylserotonin O-methyltransferase 3 41% 100%
2219 predicted protein 3 72% 100%
2147 iron ABC transporter, permease and ATP-binding protein 3 30% 67%
1967 methanol--5- hydroxybenzimidazolylcobamide co-methyltransferase 3 79% 100%
1221 serine protease inhibitor; squamous cell carcinoma antigen 3 56% 100%
1217 site-specific recombinase 3 52% 100%
1194 ATP-dependent DNA helicase 3 29% 100%
1153 sodium/calcium exchanger protein 3 38% 67%
1152 sodium-dependent transporter 3 25% 67%
1091 conserved hypothetical protein 3 44% 100%
1081 conserved hypothetical protein 3 25% 67%
945 aldehyde ferredoxin oxidoreductase 3 30% 100%
150 cell surface protein 3 42% 67%
3145 carbon-monoxide dehydrogenase, subunit alpha 3 88% 100%
2800 methionine-10+ related protein 3 33% 67%
1933 thiamine biosynthesis protein thiC 3 43% 100%
1792 3-isopropylmalate, isocitrate dehydrogenase 3 35% 100%
1774 transcription initiation factor TFIIB 3 65% 100%
1766 MotA/TolQ/ExbB proton channel family protein 3 75% 100%
1648 formylmethanofuran dehydrogenase, subunit C 3 62% 100%
1827 predicted protein 3 43% 100%
1518 conserved hypothetical protein 3 26% 67%
1507 conserved hypothetical protein 3 71% 100%
47 cell division control protein 6 2 29% 100%
67 chemotaxis protein cheD 2 33% 100%
1042 ubiE/COQ5 methyltransferase 2 30% 100%
1598 hypothetical protein 2 34% 100%
1914 predicted protein 2 53% 100%
2908 diaminopimelate decarboxylase 2 24% 100%
2848 nitrogen fixation protein 2 25% 100%
2345 predicted protein 2 26% 100%
2332 flavoprotein; flavoprotein A 2 40% 100%
2313 conserved hypothetical protein 2 28% 100%
2298 flagella accessory protein J 2 35% 100%
2280 nitrate reductase, electron transfer subunit 2 23% 100%
2277 cytochrome-c peroxidase; methylamine metabolism protein 2 53% 100%
1593 tetrahydromethanopterin S-methyltransferase subunit H 2 47% 100%
1464 purine-binding chemotaxis protein 2 40% 100%
3916 conserved hypothetical protein 2 62% 100%
3143 carbon-monoxide dehydrogenase, subunit beta 2 97% 100%
2914 exoenzymes regulatory protein precursor 2 26% 100%
2906 conserved hypothetical protein 2 62% 100%
2856 DNA replication licensing factor; mcm protein 2 57% 100%
2344 glucokinase 2 25% 100%
2325 ornithine/aspartate carbamoyltransferase 2 29% 100%
2291 anthranilate synthase, component II; GMP synthase 2 30% 100%
2272 heterodisulfide reductase, subunit A 2 37% 100%
3028 conserved hypothetical protein 2 34% 100%
2992 conserved hypothetical protein 2 36% 100%
2951 conserved hypothetical protein 2 43% 100%
2327 transposase 2 94% 100%
2253 predicted protein 2 36% 100%
2247 predicted protein 2 23% 100%
2110 protease; peptidase family protein U32 2 35% 100%
1215 conserved hypothetical protein 2 63% 100%
1128 predicted protein 2 46% 100%
891 intracellular protease I 2 35% 100%
843 predicted protein 2 43% 100%
3923 urease 2 61% 100%
3878 glucan 1,4-alpha-glucosidase 2 28% 100%
3821 F420-nonreducing hydrogenase 2 60% 100%
3173 hsp20/alpha crystallin family protein 2 50% 100%
3144 carbon-monoxide dehydrogenase, subunit epsilon 2 81% 100%
3134 conserved hypothetical protein 2 32% 100%
3130 conserved hypothetical protein 2 31% 100%
3092 conserved hypothetical protein 2 32% 100%
3061 orotate phosphoribosyltransferase 2 82% 100%
2909 DNA ligase (ATP) 2 33% 100%
2861 hypoxanthine/orotate phosphoribosyltransferase 2 33% 100%
2855 conserved hypothetical protein 2 24% 100%
2809 3-isopropylmalate dehydratase 2 31% 100%
2342 cobalamin biosynthesis protein 2 27% 100%
2334 glutamate--ammonia ligase 2 26% 100%
2299 conserved hypothetical protein 2 25% 100%
2292 carbon-nitrogen hydrolase 2 44% 100%
1905 conserved hypothetical protein 2 32% 100%
1899 conserved hypothetical protein 2 85% 100%
1808 conserved hypothetical protein 2 32% 100%
1714 predicted protein 2 48% 100%
1660 replication factor C small subunit 2 36% 100%
1651 conserved hypothetical protein 2 41% 100%
1124 conserved hypothetical protein 2 76% 100%
1086 methyltransferase 2 80% 100%
151 hypothetical protein 2 65% 100%
114 3-isopropylmalate dehydratase 2 55% 100%
2994 ss-DNA-specific exonuclease 2 33% 100%
2274 predicted protein 2 95% 100%
2120 predicted protein 2 65% 100%
2107 conserved hypothetical protein 2 31% 100%
2072 conserved hypothetical protein 2 53% 100%
1771 outer membrane protein expression inhibitor 2 76% 100%
1652 hypothetical protein 2 52% 100%
1509 predicted protein 2 47% 100%
1088 hypothetical protein 2 37% 100%
1038 DNA topoisomerase 2 33% 100%
935 xanthine-guanine phosphoribosyltransferase 2 44% 100%
847 predicted protein 2 74% 100%
76 integral membrane protein 2 22% 100%
1653 small heat shock protein, class I 2 49% 100%
1125 predicted protein 2 73% 100%
2104 predicted protein 2 32% 100%
3964 chlorohydrolase family 2 23% 100%
3924 predicted protein 2 27% 100%
2995 predicted protein 2 28% 100%
2763 sulfhydrogenase II, subunit g 2 35% 100%
2212 NifU protein 2 67% 100%
2119 predicted protein 2 23% 100%
2118 predicted protein 2 74% 100%
2109 transposase 2 99% 100%
2076 predicted protein 2 89% 100%
3769 transposase 2 98% 100%
3726 predicted protein 2 70% 100%
2252 predicted protein 2 34% 100%
2249 predicted protein 2 29% 100%
2150 predicted protein 2 78% 100%
2121 predicted protein 2 29% 100%
2108 predicted protein 2 54% 100%
2075 transmembrane protein mttP 2 85% 100%
2059 isochorismatase 2 56% 100%
1961 predicted protein 2 33% 100%
1850 integral membrane protein 2 37% 100%
2194 hypothetical protein 2 71%