Genes Categorized by Hmmer Family

Find all genes containing the specified PFAM domain.

Family Family Description Annotated Genes
2-Hacid_DH D-isomer specific 2-hydroxyacid dehydrogenases 2
2-Hacid_DH_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2
2_5_ligase 2',5' RNA ligase family 1
60s_ribosomal 60s Acidic ribosomal protein 1
A1pp Appr-1"-p processing enzyme family 1
AAA ATPases associated with various cellular activities (AAA) 11
ABC-3 ABC 3 transport family 1
ABC2_membrane ABC-2 type transporter 4
ABC_membrane ABC transporter transmembrane region. 5
ABC_tran ABC transporter 98
ACT ACT domain 11
AFOR Aldehyde ferredoxin oxidoreductase 3
AFOR_N Aldehyde ferredoxin oxidoreductase, N-terminal domain 3
AICARFT_IMPCHas AICARFT/IMPCHase bienzyme 1
AIRC AIR carboxylase 2
AIRS AIR synthase related protein 6
AIRS_C AIR synthase related protein, C-terminal domain 6
ALAD Delta-aminolevulinic acid dehydratase 1
AMP-binding AMP-binding enzyme 6
AP_endonucleas1 AP endonuclease family 1 1
AP_endonulease2 AP endonuclease family 2 3
ASNC_trans_reg AsnC family 2
ATP-synt ATP synthase 1
ATP-synt_A ATP synthase A chain 1
ATP-synt_A-c ATP synthase Alpha chain, C terminal 1
ATP-synt_B ATP synthase B/B' CF(0) 1
ATP-synt_C ATP synthase subunit C 2
ATP-synt_D ATP synthase subunit D 1
ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain 1
ATP-synt_F ATP synthase (F/14-kDa) subunit 1
ATP-synt_ab ATP synthase alpha/beta family 4
ATP-synt_ab_C ATP synthase ab C terminal 4
ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain 4
ATP_synt_B_c ATP synthase beta chain, carboxyl terminus 1
ATZ_TRZ Chlorohydrolase 2
Abi CAAX amino terminal protease family 5
Acetate_kinase Acetokinase family 1
Acetyltransf Acetyltransferase (GNAT) family 27
Aconitase_C Aconitase C-terminal domain 4
Acylphosphatase Acylphosphatase 2
Adenine_deam Adenine deaminase 1
Adenylate_cyc_2 Adenylate cyclase 1
Adenylsucc_synt Adenylosuccinate synthetase 2
AdoHcyase S-adenosyl-L-homocysteine hydrolase 1
AhpC-TSA AhpC/TSA family 3
Aldolase_II Class II Aldolase and Adducin N-terminal domain. 1
Amidase Amidase 1
Ammonium_transp Ammonium Transporter Family 3
ApbE ApbE family 1
Arch_flagellin Archaebacterial flagellin 3
ArgJ ArgJ family 1
Arg_deiminase Arginine deiminase 1
Arginosuc_synth Arginosuccinate synthase 1
Armadillo_seg Armadillo/beta-catenin-like repeats 1
Asn_synthase Asparagine synthase 1
Asparaginase Asparaginase 1
B12-binding B12 binding domain 15
B12-binding_2 B12 binding domain 14
BNR BNR repeat 1
BPD_transp Binding-protein-dependent transport systems inner membrane component 37
BPL Biotin protein ligase 1
BPL_C Biotin protein ligase C terminal domain 2
Bac_Ubq_Cox Bacterial Cytochrome Ubiquinol Oxidase 1
Bacterial_PQQ PQQ enzyme repeat 20
Band_7 Band 7 family 1
BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family 1
Big_2 Bacterial Ig-like domain (group 2) 3
BioY BioY family 1
Biotin_carb_C Biotin carboxylase C-terminal domain 1
Biotin_synth Biotin synthase 3
CAT Chloramphenicol acetyltransferase 1
CBAH Choloylglycine hydrolase 1
CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1
CBIA Cobyrinic acid a,c-diamide synthase 3
CBS CBS domain 15
CDP-OH_P_transf CDP-alcohol phosphatidyltransferase 3
CMD Carboxymuconolactone decarboxylase 10
CN_hydrolase Carbon-nitrogen hydrolase 3
CO_dh CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit 2
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain 2
CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 1
CPSase_L_chain Carbamoyl-phosphate synthase (CPSase) 2
CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain 1
CRCB CrcB-like protein 3
Cache Cache domain 1
Cation_ATPase_C Cation transporting ATPase, C-terminus 3
Cation_ATPase_N Cation transporter/ATPase, N-terminus 4
Cation_efflux Cation efflux family 8
CbiA Cobyrinic acid a,c-diamide synthase 3
CbiC Precorrin-8X methylmutase 1
CbiD CbiD 1
CbiM CbiM 3
CbiN Cobalt transport protein component CbiN 1
CbiQ Cobalt transport protein 8
CbiX CbiX 2
CheB_methylest CheB methylesterase 4
CheR CheR methyltransferase 4
CheW CheW-like domain 5
Chorismate_mut Chorismate mutase 2
Chorismate_synt Chorismate synthase 1
CitG CitG family 1
CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 1
CobS Cobalamin-5-phosphate synthase 1
CorA CorA-like Mg2+ transporter protein 1
CstA Carbon starvation protein CstA 1
Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme 2
CytC_asm Cytochrome C assembly protein 1
Cytidylyl_trans Cytidylyltransferase 1
Cytidylyltransf Cytidylyltransferase 3
Cyto_ox_2 Cytochrome oxidase subunit II 1
DEAD DEAD/DEAH box helicase 10
DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase 1
DHDPS Dihydrodipicolinate synthetase family 1
DHH DHH family 7
DHHA1 DHHA1 domain 6
DHOdehase Dihydroorotate dehydrogenase 1
DHPS Dihydropteroate synthase 1
DHquinase_I Type I 3-dehydroquinase 1
DLH Dienelactone hydrolase family 3
DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase 2
DNA_gyraseB_C DNA gyrase B subunit, carboxyl terminus 1
DNA_ligase DNA ligase 2
DNA_mis_repair DNA mismatch repair protein 1
DNA_photolyase DNA photolyase 1
DNA_pol_B DNA polymerase family B 1
DNA_polymeraseX DNA polymerase X family 1
DNA_primase_S DNA primase small subunit 1
DNA_repair DNA repair exonuclease 2
DNA_topoisoII DNA topoisomerase II (N-terminal region) 1
DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A 1
DS Deoxyhypusine synthase 3
DUF101 Protein of unknown function 1
DUF102 Protein of unknown function 1
DUF105 Domain of unknown function 1
DUF106 Integral membrane protein 1
DUF107 Protein of unknown function 1
DUF108 Domain of unknown function 1
DUF109 Protein of unknown function 1
DUF110 Integral membrane protein 4
DUF111 Protein of unknown function 1
DUF112 Integral membrane protein 1
DUF113 Protein of unknown function 1
DUF114 Protein of unknown function 1
DUF115 Protein of unknown function 1
DUF116 Protein of unknown function 2
DUF118 Protein of unknown function 3
DUF120 Domain of unknown function 1
DUF121 Protein of unknown function 1
DUF122 Protein of unknown function 1
DUF123 Domain of unknown function 1
DUF124 Protein of unknown function 2
DUF126 Protein of unknown function 2
DUF127 Protein of unknown function 1
DUF128 Domain of unknown function 2
DUF129 Protein of unknown function 2
DUF131 Protein of unknown function 1
DUF133 Protein of unknown function 1
DUF134 Protein of unknown function 3
DUF135 Protein of unknown function 1
DUF136 Protein of unknown function 1
DUF137 Protein of unknown function 1
DUF14 Domain of unknown function 4
DUF142 Domain of unknown function DUF142 6
DUF147 Domain of unknown function DUF147 1
DUF15 Domain of unknown function 1
DUF151 Uncharacterized ACR, COG1259 1
DUF153 Uncharacterized ACR, COG1433 5
DUF157 Uncharacterized protein PaaI, COG2050 1
DUF158 Uncharacterized LmbE-like protein, COG2120 1
DUF160 Uncharacterized ACR, YjeK family COG1509 1
DUF165 Uncharacterized ACR, YhhQ family COG1738 1
DUF166 Uncharacterized ArCR, COG1810 2
DUF167 Uncharacterized ACR, YggU family COG1872 1
DUF169 Uncharacterized ArCR, COG2043 4
DUF173 Uncharacterized ACR, COG1354 1
DUF176 Uncharacterized ACR, YneC family COG1359 1
DUF181 Uncharacterized ACR, COG1944 1
DUF190 Uncharacterized ACR, COG1993 3
DUF196 Uncharacterized ACR, COG1343 1
DUF197 Uncharacterized ACR, COG1458 1
DUF198 Uncharacterized ACR, COG1469 1
DUF201 Domain of unknown function DUF201 2
DUF203 Domain of unknown function 1
DUF204 Domain of unknown function DUF 1
DUF209 Uncharacterized BCR, YhhW family COG1741 1
DUF21 Domain of unknown function 1
DUF214 Predicted permease 15
DUF217 Uncharacterized ACR, COG1753 1
DUF224 Domain of unknown function (DUF224) 6
DUF24 Protein of unknown function 3
DUF25 Domain of unknown function 1
DUF27 Domain of unknown function 1
DUF3 Cof family 1
DUF34 Domain of unknown function 1
DUF35 Domain of unknown function 1
DUF39 Domain of unknown function 2
DUF44 Domain of unknown function 2
DUF45 Protein of unknown function 2
DUF46 Putative integral membrane protein 1
DUF47 Protein of unknown function 1
DUF48 Protein of unknown function 1
DUF5 Domain found in bacterial signal proteins 3
DUF51 Protein of unknown function 1
DUF52 Protein of unknown function 1
DUF53 Protein of unknown function 1
DUF54 Protein of unknown function 2
DUF56 Integral membrane protein 2
DUF57 Protein of unknown function 1
DUF58 Protein of unknown function 2
DUF59 Domain of unknown function 3
DUF6 Integral membrane protein 6
DUF60 Domain of unknown function 1
DUF62 Protein of unknown function 1
DUF63 Membrane protein of unknown function 1
DUF64 Protein of unknown function 1
DUF65 Protein of unknown function 5
DUF66 Protein of unknown function 1
DUF67 Protein of unknown function 1
DUF68 Protein of unknown function 1
DUF69 Protein of unknown function 1
DUF7 Integral membrane protein 1
DUF71 Domain of unknown function 1
DUF72 Protein of unknown function 1
DUF74 Domain of unknown function 1
DUF75 Protein of unknown function 2
DUF79 Protein of unknown function 4
DUF81 Domain of unknown function 1
DUF83 Domain of unknown function 1
DUF85 Domain of unknown function 1
DUF86 Protein of unknown function 3
DUF88 Protein of unknown function 1
DUF89 Protein of unknown function 1
DUF90 Domain of unknown function 6
DUF92 Integral membrane protein 1
DUF93 Protein of unknown function 2
DUF94 Domain of unknown function 1
DUF95 Integral membrane protein 1
DUF98 Protein of unknown function 1
DUF99 Protein of unknown function 1
Dala_Dala_ligas D-ala D-ala ligase 1
DapB Dihydrodipicolinate reductase 1
DeoC Deoxyribose-phosphate aldolase 2
Desulfoferrodox Desulfoferrodoxin 1
Dihydrooratase Dihydroorotase-like 1
Dihydroorotase Dihydroorotase-like 1
Diphthamide_syn Putative diphthamide synthesis protein 1
DnaJ DnaJ domain 2
DnaJ_C DnaJ C terminal region 1
DnaJ_CXXCXGXG DnaJ central domain (4 repeats) 1
DrsE DsrE-like protein 1
DsbD Cytochrome C biogenesis protein transmembrane region 3
E1-E2_ATPase E1-E2 ATPase 9
EF1BD EF-1 guanine nucleotide exchange domain 1
EFG_C Elongation factor G C-terminus 1
EPSP_syntase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 1
ERCC4 ERCC4 domain 1
Epimerase NAD dependent epimerase/dehydratase family 7
Exci_endo_N Endo/excinuclease amino terminal domain 1
FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family 1
FAD_binding_4 FAD binding domain 2
FKBP FKBP-type peptidyl-prolyl cis-trans isomerases 4
FMN_dh FMN-dependent dehydrogenase 1
FTR Formylmethanofuran--tetrahydromethanopterin formyltransferase 1
FTR_C FTR, proximal lobe 1
FUR Ferric uptake regulator family 2
Fasciclin Fasciclin domain 2
FdhD-NarQ FdhD/NarQ family 1
Fe-ADH Iron-containing alcohol dehydrogenases 1
Fe_dep_repr_C Iron dependent repressor, metal binding and dimerisation domain 3
Fe_dep_repress Iron dependent repressor 3
FecCD_family FecCD transport family 13
FeoB Ferrous iron transport protein B 2
Fibrillarin Fibrillarin 1
Flavin_Reduct Flavin reductase like domain 2
Flavoprotein Flavoprotein 4
FlpD Methyl-viologen-reducing hydrogenase, delta subunit 1
FtsJ FtsJ cell division protein 3
FwdE Tungsten formylmethanofuran dehydrogenase, subunit E, FwdE 5
GAF GAF domain 13
GARS Phosphoribosylglycinamide synthetase (GARS) 1
GARS_B Phosphoribosylglycinamide synthetase, B domain 1
GARS_C Phosphoribosylglycinamide synthetase, C domain 1
GARS_N Phosphoribosylglycinamide synthetase, N domain 1
GATase Glutamine amidotransferase class-I 8
GATase_2 Glutamine amidotransferases class-II 3
GFO_IDH_MocA Oxidoreductase family 1
GHMP_kinases GHMP kinases putative ATP-binding proteins 1
GLFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2
GLFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2
GMP_synt_C GMP synthase C terminal domain 1
GSPII_E Bacterial type II secretion system protein 5
GTP1_OBG GTP1/OBG family 4
GTP_EFTU Elongation factor Tu family 4
Glu-tRNAGln Glu-tRNAGln amidotransferase C subunit 1
Glu_synthase Conserved region in glutamate synthase 1
GlutR Glutaminyl-tRNA reductase 1
Glycos_trans_3N Glycosyl transferase family, helical bundle domain 2
Glycos_transf_1 Glycosyl transferases group 1 20
Glycos_transf_2 Glycosyl transferases 14
Glycos_transf_3 glycosyl transferase family 2
Glyoxalase Glyoxalase 3
GntP_permease GntP family permease 1
Grp1_Fun34_YaaH GPR1/FUN34/yaaH family 3
GrpE GrpE 1
HAMP HAMP domain 2
HATPase_c Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase 57
HD HD domain 3
HEM4 Uroporphyrinogen-III synthase HemD 1
HHH Helix-hairpin-helix motif. 1
HIT HIT family 1
HK Hydroxyethylthiazole kinase family 1
HMA Heavy-metal-associated domain 5
HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase 1
HMGL-like HMGL-like 7
HMG_CoA_synt Hydroxymethylglutaryl-coenzyme A synthase 1
HNH HNH endonuclease 1
HRDC HRDC domain 1
HSP20 Hsp20/alpha crystallin family 3
HSP70 Hsp70 protein 2
HTH_3 Helix-turn-helix 9
HTH_4 Helix-turn-helix protein, copG family 4
HTH_5 Bacterial regulatory protein, arsR family 12
HTH_7 Helix-turn-helix domain of resolvase 9
Ham1p_like Ham1 family 1
HesB-like HesB-like domain 1
HhH-GPD HhH-GPD superfamily base excision DNA repair protein 5
HisG ATP phosphoribosyltransferase 1
His_biosynth Histidine biosynthesis protein 2
Hist_deacetyl Histone deacetylase family 1
Histidinol_dh Histidinol dehydrogenase 1
Homoserine_dh Homoserine dehydrogenase 1
Hpt Hpt domain 2
HupF_HypC HupF/HypC family 1
HycI Hydrogenase maturation protease 2
Hydantoinase Hydantoinase/oxoprolinase 2
Hydantoinase_A Hydantoinase/oxoprolinase 10
Hydantoinase_B Hydantoinase B/oxoprolinase 1
Hydrolase haloacid dehalogenase-like hydrolase 19
HypA Hydrogenase expression/synthesis hypA family 2
HypB_UreG HypB/UreG nucleotide-binding domain 1
HypD Hydrogenase formation hypA family 1
IF-2B Initiation factor 2 subunit family 2
IF2 Initiation factor 2