Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
F. verticillioides N/A 41.78 Mb 41.7 Mb 36 1.96 Mb 210 392.4 Kb 99.31
F. verticillioides mito N/A 93.92 Kb 93.92 Kb 3 48.71 Kb 3 48.71 Kb 98.52
F. graminearum N/A 36.45 Mb 36.22 Mb 31 5.35 Mb 433 184.59 Kb 98.65
F. oxysporum N/A 61.36 Mb 59.94 Mb 114 1.98 Mb 1,362 95.42 Kb 95.02
F. graminearum mito N/A 107.73 Kb 107.73 Kb 2 57.43 Kb 2 57.43 Kb 99.41
F. oxysporum mito N/A 84.76 Kb 74.47 Kb 3 44.09 Kb 9 15.65 Kb 83.70

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome